Transcript: lnc-XRCC4-1:2

Basic information

LNCipedia transcript ID: lnc-XRCC4-1:2 
LNCipedia gene ID: lnc-XRCC4-1
Location (hg38): chr5:83388155-83398288
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 356 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010009; NONHSAT102515
Alternative gene names: XLOC_004448; linc-VCAN


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -155.4582 non-coding 
CPAT coding probability 4.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-XRCC4-1:2 no no no no

Available literature

  1. Xia (2015), Long noncoding RNA FER1L4 suppresses cancer cell growth by acting as a competing endogenous RNA and regulating PTEN expression., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-XRCC4-1:2
3.1 lnc-XRCC4-1:2
4.0 lnc-XRCC4-1:2
4.1 lnc-XRCC4-1:2
5.0 lnc-XRCC4-1:2
5.1 lnc-MSH3-29:2
5.2 lnc-XRCC4-1:2