Transcript: lnc-XRN2-1:3

Basic information

LNCipedia transcript ID: lnc-XRN2-1:3 
LNCipedia gene ID: lnc-XRN2-1
Location (hg38): chr20:21398893-21400377
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 509 bp
Exons: 3
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT078937; FPKM1_group_18933_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -336.4494 non-coding 
CPAT coding probability 0.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-XRN2-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-XRN2-1:3
4.0 lnc-XRN2-1:3
4.1 lnc-XRN2-1:3
5.0 lnc-XRN2-1:3
5.1 lnc-XRN2-1:3
5.2 lnc-XRN2-1:3