Transcript: lnc-YAP1-1:1

Basic information

LNCipedia transcript ID: lnc-YAP1-1:1 
LNCipedia gene ID: lnc-YAP1-1
Ensembl Gene ID: ENSG00000260008
Ensembl Transcript ID: ENST00000566440
Location (hg38): chr11:102107886-102109842
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1957 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000566440.1; RP11-732A21.2-001; OTTHUMT00000394149.1; NONHSAT023868
Alternative gene names: ENSG00000260008.1; RP11-732A21.2; OTTHUMG00000167321.1; AP001527.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -55.4948 non-coding 
CPAT coding probability 3.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-YAP1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-YAP1-1:1
4.0 lnc-YAP1-1:1
4.1 lnc-YAP1-1:1
5.0 lnc-YAP1-1:1
5.1 lnc-DYNC2H1-17:1
5.2 lnc-YAP1-1:1