Transcript: lnc-YBEY-5:1

Basic information

LNCipedia transcript ID: lnc-YBEY-5:1 
LNCipedia gene ID: lnc-YBEY-5
Ensembl Gene ID: ENSG00000228137
Ensembl Transcript ID: ENST00000444966
Location (hg38): chr21:46246890-46247682
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 390 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000444966.1; AP001469.7-001; OTTHUMT00000207252.1; NONHSAT083047
Alternative gene names: ENSG00000228137.1; AP001469.7; OTTHUMG00000090628.1; FLJ10508; NCRNA00031; AP001469.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -81.9085 non-coding 
CPAT coding probability 1.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-YBEY-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-YBEY-1:1
4.0 MCM3AP-AS1:15
4.1 MCM3AP-AS1:15
5.0 MCM3AP-AS1:15
5.1 lnc-PRMT2-35:1
5.2 lnc-YBEY-5:1