Transcript: lnc-YES1-5:1

Basic information

LNCipedia transcript ID: lnc-YES1-5:1 
LNCipedia gene ID: lnc-YES1-5
Ensembl Gene ID: ENSG00000272461
Ensembl Transcript ID: ENST00000606879
Location (hg38): chr18:962592-976883
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 657 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000606879.1
Alternative gene names: ENSG00000272461.1; RP11-689C9.1; AP005328.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -71.3059 non-coding 
CPAT coding probability 3.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-YES1-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-YES1-5:1
4.0 lnc-YES1-5:1
4.1 lnc-YES1-5:1
5.0 lnc-YES1-5:1
5.1 lnc-SMAD2-378:1
5.2 lnc-YES1-5:1