Transcript: lnc-YIF1A-3:1

Basic information

LNCipedia transcript ID: lnc-YIF1A-3:1 
LNCipedia gene ID: lnc-YIF1A-3
Ensembl Gene ID: ENSG00000254762
Ensembl Transcript ID: ENST00000533287
Location (hg38): chr11:66267635-66268129
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 272 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000533287.1; RP11-867G23.2-001; OTTHUMT00000391824.1; NONHSAT022274
Alternative gene names: ENSG00000254762.1; RP11-867G23.2; OTTHUMG00000166906.1; AP001107.7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 2.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-YIF1A-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-YIF1A-3:1
4.0 lnc-YIF1A-3:1
4.1 lnc-YIF1A-3:1
5.0 lnc-YIF1A-3:1
5.1 lnc-LTBP3-59:1
5.2 lnc-YIF1A-3:1