Transcript: lnc-YIF1A-5:1

Basic information

LNCipedia transcript ID: lnc-YIF1A-5:1 
LNCipedia gene ID: lnc-YIF1A-5
Ensembl Gene ID: ENSG00000254461
Ensembl Transcript ID: ENST00000533576
Location (hg38): chr11:66259567-66261834
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 539 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000533576.1; RP11-755F10.3-001; OTTHUMT00000391822.1; NONHSAT022271
Alternative gene names: ENSG00000254461.1; RP11-755F10.3; OTTHUMG00000166904.1; AP001107.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -354.8936 non-coding 
CPAT coding probability 3.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-YIF1A-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-YIF1A-5:1
4.0 lnc-YIF1A-5:1
4.1 lnc-YIF1A-5:1
5.0 lnc-YIF1A-5:1
5.1 lnc-LTBP3-54:1
5.2 lnc-YIF1A-5:1