Transcript: lnc-YIPF3-1:1

Basic information

LNCipedia transcript ID: lnc-YIPF3-1:1 
LNCipedia gene ID: lnc-YIPF3-1
Ensembl Gene ID: ENSG00000271754
Ensembl Transcript ID: ENST00000607571
Location (hg38): chr6:43519180-43519724
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 545 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000607571.1
Alternative gene names: ENSG00000271754.1; RP3-337H4.9; AL355802.3; AL355802.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 261.3605 coding 
CPAT coding probability 0.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-YIPF3-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-YIPF3-1:1
4.0 lnc-YIPF3-1:1
4.1 lnc-YIPF3-1:1
5.0 lnc-YIPF3-1:1
5.1 lnc-NFKBIE-19:1
5.2 lnc-YIPF3-1:1