Transcript: lnc-YRDC-1:1

Basic information

LNCipedia transcript ID: lnc-YRDC-1:1 
LNCipedia gene ID: lnc-YRDC-1
Ensembl Gene ID: ENSG00000233728
Ensembl Transcript ID: ENST00000433474
Location (hg38): chr1:37799720-37800879
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 700 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000433474.1; RP11-109P14.9-001; OTTHUMT00000091275.1; NONHSAT002466
Alternative gene names: ENSG00000233728.1; RP11-109P14.9; OTTHUMG00000037488.1; AL929472.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 329.7401 coding 
CPAT coding probability 1.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-YRDC-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-YRDC-1:1
4.0 lnc-YRDC-1:1
4.1 lnc-YRDC-1:1
5.0 lnc-YRDC-1:1
5.1 lnc-COL8A2-57:2
5.2 lnc-YRDC-1:1