Transcript: lnc-YTHDC2-1:3

Basic information

LNCipedia transcript ID: lnc-YTHDC2-1:3 
LNCipedia gene ID: lnc-YTHDC2-1
Ensembl Gene ID: ENSG00000232633
Ensembl Transcript ID: ENST00000510381
Location (hg38): chr5:113435079-113437174
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1698 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000510381.2; CTD-2201G3.1-002; OTTHUMT00000371802.1; NONHSAT103266
Alternative gene names: ENSG00000232633.3; CTD-2201G3.1; OTTHUMG00000162864.2; ENSG00000232633.4; AC079465.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.42 non-coding 
CPAT coding probability 0.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-YTHDC2-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-YTHDC2-1:3
4.0 lnc-YTHDC2-1:3
4.1 lnc-YTHDC2-1:3
5.0 lnc-YTHDC2-1:3
5.1 lnc-AP3S1-36:4
5.2 lnc-YTHDC2-1:3