Transcript: lnc-YTHDF3-4:1

Basic information

LNCipedia transcript ID: lnc-YTHDF3-4:1 
LNCipedia gene ID: lnc-YTHDF3-4
Ensembl Gene ID: ENSG00000261542
Ensembl Transcript ID: ENST00000569835
Location (hg38): chr8:63215981-63218034
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2054 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000569835.1; RP11-16E18.3-001; OTTHUMT00000422619.1; NONHSAT126929
Alternative gene names: ENSG00000261542.1; RP11-16E18.3; OTTHUMG00000173254.1; AC011978.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -121.5949 non-coding 
CPAT coding probability 5.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-YTHDF3-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NKAIN3-4:1
4.0 lnc-NKAIN3-4:1
4.1 lnc-NKAIN3-4:1
5.0 lnc-NKAIN3-4:1
5.1 lnc-SGK3-35:1
5.2 lnc-YTHDF3-4:1