Transcript: lnc-YWHAQ-1:1

Basic information

LNCipedia transcript ID: lnc-YWHAQ-1:1 
LNCipedia gene ID: lnc-YWHAQ-1
Ensembl Gene ID: ENSG00000243491
Ensembl Transcript ID: ENST00000474667
Location (hg38): chr2:9757496-9770341
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1947 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003204; ENST00000474667; ENST00000474667.1; RP11-521D12.5-001; OTTHUMT00000353414.1; NONHSAT069067
Alternative gene names: XLOC_001982; linc-YWHAQ-3; ENSG00000243491; RP11-521D12.5; ENSG00000243491.1; OTTHUMG00000159119.1; AC082651.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -31.9182 non-coding 
CPAT coding probability 14.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-YWHAQ-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-YWHAQ-1:1
3.1 lnc-YWHAQ-1:1
4.0 lnc-YWHAQ-1:1
4.1 lnc-YWHAQ-1:1
5.0 lnc-YWHAQ-1:1
5.1 lnc-RAD51AP2-113:1
5.2 lnc-YWHAQ-1:1