Transcript: lnc-ZBED4-2:1

Basic information

LNCipedia transcript ID: lnc-ZBED4-2:1 
LNCipedia gene ID: lnc-ZBED4-2
Ensembl Gene ID: ENSG00000212939
Ensembl Transcript ID: ENST00000391625
Location (hg38): chr22:49548681-49556473
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3894 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000391625.2; RP1-29C18.10-001; OTTHUMT00000317431.1; NONHSAT087401
Alternative gene names: ENSG00000212939.2; RP1-29C18.10; OTTHUMG00000150300.1; Z97192.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -25.6122 non-coding 
CPAT coding probability 36.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZBED4-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZBED4-2:1
4.0 lnc-ZBED4-2:1
4.1 lnc-ZBED4-2:1
5.0 lnc-ZBED4-2:1
5.1 lnc-PIM3-8:1
5.2 lnc-ZBED4-2:1