Transcript: lnc-ZBED5-1:3

Basic information

LNCipedia transcript ID: lnc-ZBED5-1:3 
LNCipedia gene ID: lnc-ZBED5-1
Ensembl Gene ID: ENSG00000250041
Ensembl Transcript ID: ENST00000533941
Location (hg38): chr11:10896503-10899172
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 557 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000533941; ENST00000533941.1; CTD-2003C8.2-002; OTTHUMT00000386902.1; NONHSAT018009
Alternative gene names: ENSG00000250041; CTD-2003C8.2; ENSG00000250041.2; OTTHUMG00000165889.1; AC069360.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -134.7459 non-coding 
CPAT coding probability 1.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZBED5-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZBED5-1:3
3.1 lnc-ZBED5-1:3
4.0 lnc-ZBED5-1:3
4.1 lnc-ZBED5-1:3
5.0 lnc-ZBED5-1:3
5.1 lnc-C11orf16-44:9
5.2 lnc-ZBED5-1:3