Transcript: lnc-ZBTB18-1:1

Basic information

LNCipedia transcript ID: lnc-ZBTB18-1:1 
LNCipedia gene ID: lnc-ZBTB18-1
Ensembl Gene ID: ENSG00000237759
Ensembl Transcript ID: ENST00000440148
Location (hg38): chr1:244107365-244109011
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 567 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000428; ENST00000440148; ENST00000440148.1; RP11-278H7.3-001; OTTHUMT00000096515.1; NONHSAT010633
Alternative gene names: XLOC_000640; linc-C1orf100; ENSG00000237759; RP11-278H7.3; ENSG00000237759.1; OTTHUMG00000040015.1; AL590483.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.2768 non-coding 
CPAT coding probability 15.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZBTB18-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF238-1:1
3.1 lnc-ZNF238-1:1
4.0 lnc-ZNF238-1:1
4.1 lnc-ZNF238-1:1
5.0 lnc-ZNF238-1:1
5.1 lnc-KMO-36:1
5.2 lnc-ZBTB18-1:1