Transcript: lnc-ZBTB18-2:5

Basic information

LNCipedia transcript ID: lnc-ZBTB18-2:5 
LNCipedia gene ID: lnc-ZBTB18-2
Location (hg38): chr1:243917402-244047315
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1797 bp
Exons: 12
Sources: Broad Institute
Alternative transcript names: TCONS_00000011
Alternative gene names: XLOC_000639; linc-ZNF238


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -118.2578 non-coding 
CPAT coding probability 2.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZBTB18-2:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF238-2:2
3.1 lnc-ZNF238-2:3
4.0 lnc-ZNF238-2:3
4.1 lnc-ZNF238-2:3
5.0 lnc-ZNF238-2:3
5.1 lnc-KMO-34:5
5.2 lnc-ZBTB18-2:5