Transcript: lnc-ZBTB20-1:1

Basic information

LNCipedia transcript ID: lnc-ZBTB20-1:1 
LNCipedia gene ID: lnc-ZBTB20-1
Location (hg38): chr3:114314501-114316179
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1679 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000570269.1; RP11-553L6.5-001; OTTHUMT00000431034.1; NONHSAT091271
Alternative gene names: ENSG00000259976.1; RP11-553L6.5; OTTHUMG00000175755.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -16.4125 non-coding 
CPAT coding probability 0.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZBTB20-1:1 no no no no

Available literature

  1. Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.
  2. Zhou (2015), Identification and validation of potential prognostic lncRNA biomarkers for predicting survival in patients with multiple myeloma., J. Exp. Clin. Cancer Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZBTB20-1:1
4.0 lnc-ZBTB20-1:1
4.1 lnc-ZBTB20-1:1
5.0 lnc-ZBTB20-1:1
5.1 lnc-NEPRO-36:4
5.2 lnc-ZBTB20-1:1