Transcript: lnc-ZBTB20-1:4

Basic information

LNCipedia transcript ID: lnc-ZBTB20-1:4 
LNCipedia gene ID: lnc-ZBTB20-1
Ensembl Gene ID: ENSG00000259976
Ensembl Transcript ID: ENST00000570269
Location (hg38): chr3:114314501-114329714
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 15214 bp
Exons: 1
Sources: Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000570269.2
Alternative gene names: ENSG00000259976.2; MIR568; ENSG00000259976.3; AC093010.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -16.4125 non-coding 
CPAT coding probability 0.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZBTB20-1:4 no no no no

Available literature

  1. Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.
  2. Zhou (2015), Identification and validation of potential prognostic lncRNA biomarkers for predicting survival in patients with multiple myeloma., J. Exp. Clin. Cancer Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ZBTB20-1:4
5.0 lnc-ZBTB20-1:4
5.1 lnc-NEPRO-36:2
5.2 lnc-ZBTB20-1:4