Transcript: lnc-ZBTB25-3:1

Basic information

LNCipedia transcript ID: lnc-ZBTB25-3:1 
LNCipedia gene ID: lnc-ZBTB25-3
Ensembl Gene ID: ENSG00000259116
Ensembl Transcript ID: ENST00000554918
Location (hg38): chr14:64514154-64540368
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 558 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000554918.1; RP11-973N13.4-001; OTTHUMT00000414201.1; NONHSAT037341
Alternative gene names: ENSG00000259116.1; RP11-973N13.4; OTTHUMG00000171561.1; AL049869.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -136.8063 non-coding 
CPAT coding probability 3.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZBTB25-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZBTB25-3:1
4.0 lnc-ZBTB25-3:1
4.1 lnc-ZBTB25-3:1
5.0 lnc-ZBTB25-3:1
5.1 lnc-DHRS7-46:1
5.2 lnc-ZBTB25-3:1