Transcript: lnc-ZC2HC1C-1:5

Basic information

LNCipedia transcript ID: lnc-ZC2HC1C-1:5 
LNCipedia gene ID: lnc-ZC2HC1C-1
Ensembl Gene ID: ENSG00000259138
Ensembl Transcript ID: ENST00000556236
Location (hg38): chr14:75127153-75136930
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 367 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000556236.1; RP11-950C14.7-001; OTTHUMT00000415033.1; NONHSAT037844
Alternative gene names: ENSG00000259138.1; RP11-950C14.7; OTTHUMG00000171770.1; AL049780.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -249.7019 non-coding 
CPAT coding probability 0.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZC2HC1C-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM164C-1:1
4.0 lnc-FAM164C-1:1
4.1 lnc-FAM164C-1:1
5.0 lnc-FAM164C-1:1
5.1 lnc-YLPM1-7:5
5.2 lnc-ZC2HC1C-1:5