Transcript: lnc-ZC3H11B-1:18

Basic information

LNCipedia transcript ID: lnc-ZC3H11B-1:18 
LNCipedia gene ID: lnc-ZC3H11B-1
Location (hg38): chr1:219409681-219411941
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 811 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: TCONS_00000733; ENST00000441790; ENST00000441790.1; RP11-392O17.1-001; OTTHUMT00000098812.1; NONHSAT009554
Alternative gene names: XLOC_001208; linc-GPATCH2-9; ENSG00000228536; RP11-392O17.1; ENSG00000228536.1; OTTHUMG00000041231.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 44.3004 non-coding 
CPAT coding probability 16.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ZC3H11B-1:18 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC30A10-2:2
3.1 lnc-SLC30A10-2:2
4.0 lnc-SLC30A10-2:2
4.1 lnc-SLC30A10-1:15
5.0 lnc-SLC30A10-1:15
5.1 lnc-LEFTY2-89:18
5.2 lnc-ZC3H11B-1:18