Transcript: lnc-ZC3H11B-1:8

Basic information

LNCipedia transcript ID: lnc-ZC3H11B-1:8 
LNCipedia gene ID: lnc-ZC3H11B-1
Ensembl Gene ID: ENSG00000228536
Ensembl Transcript ID: ENST00000441790
Location (hg38): chr1:219409523-219459194
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1087 bp
Exons: 3
Sources: Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000441790.2
Alternative gene names: ENSG00000228536.2; AL513283.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 44.3004 non-coding 
CPAT coding probability 8.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ZC3H11B-1:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-LEFTY2-89:8
5.1 lnc-LEFTY2-89:8
5.2 lnc-ZC3H11B-1:8