Transcript: lnc-ZC3H11B-3:1

Basic information

LNCipedia transcript ID: lnc-ZC3H11B-3:1 
LNCipedia gene ID: lnc-ZC3H11B-3
Ensembl Gene ID: ENSG00000223842
Ensembl Transcript ID: ENST00000420237
Location (hg38): chr1:219222248-219225497
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1126 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000732; ENST00000420237; ENST00000420237.1; RP11-135J2.3-001; OTTHUMT00000090219.1; NONHSAT009548
Alternative gene names: XLOC_001207; linc-GPATCH2-1; ENSG00000223842; RP11-135J2.3; ENSG00000223842.1; OTTHUMG00000037143.1; AL360093.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -75.5634 non-coding 
CPAT coding probability 6.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZC3H11B-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC30A10-3:1
3.1 lnc-SLC30A10-3:1
4.0 lnc-SLC30A10-3:1
4.1 lnc-SLC30A10-3:1
5.0 lnc-SLC30A10-3:1
5.1 lnc-LEFTY2-91:1
5.2 lnc-ZC3H11B-3:1