Transcript: lnc-ZC3H12D-6:1

Basic information

LNCipedia transcript ID: lnc-ZC3H12D-6:1 
LNCipedia gene ID: lnc-ZC3H12D-6
Ensembl Gene ID: ENSG00000230205
Ensembl Transcript ID: ENST00000417838
Location (hg38): chr6:148133809-148137404
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 426 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011591; ENST00000417838; ENST00000417838.1; RP11-631F7.2-001; OTTHUMT00000042617.1; NONHSAT115469
Alternative gene names: XLOC_005870; linc-SHPRH-1; ENSG00000230205; RP11-631F7.2; ENSG00000230205.1; OTTHUMG00000015771.1; AL359382.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -221.745 non-coding 
CPAT coding probability 4.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZC3H12D-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZC3H12D-2:1
3.1 lnc-ZC3H12D-6:1
4.0 lnc-ZC3H12D-6:1
4.1 lnc-ZC3H12D-6:1
5.0 lnc-ZC3H12D-6:1
5.1 lnc-RAET1G-30:1
5.2 lnc-ZC3H12D-6:1