Transcript: lnc-ZCCHC24-2:1

Basic information

LNCipedia transcript ID: lnc-ZCCHC24-2:1 
LNCipedia gene ID: lnc-ZCCHC24-2
Ensembl Gene ID: ENSG00000229569
Ensembl Transcript ID: ENST00000427035
Location (hg38): chr10:79000484-79003803
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2018 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000427035; ENST00000427035.1; RP11-481G8.2-001; OTTHUMT00000048939.1; NONHSAT015091
Alternative gene names: ENSG00000229569; RP11-481G8.2; ENSG00000229569.1; OTTHUMG00000018558.1; AL356753.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -28.1812 non-coding 
CPAT coding probability 53.74% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ZCCHC24-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZCCHC24-2:1
3.1 lnc-ZCCHC24-2:1
4.0 lnc-ZCCHC24-2:1
4.1 lnc-ZCCHC24-2:1
5.0 lnc-ZCCHC24-2:1
5.1 lnc-VSIR-84:1
5.2 lnc-ZCCHC24-2:1