Transcript: lnc-ZCCHC7-2:1

Basic information

LNCipedia transcript ID: lnc-ZCCHC7-2:1 
LNCipedia gene ID: lnc-ZCCHC7-2
Location (hg38): chr9:37079896-37090401
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4375 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000429493; ENST00000429493.1; RP11-220I1.1-001; OTTHUMT00000052436.1; NR_036592
Alternative gene names: ENSG00000233137; RP11-220I1.1; ENSG00000233137.1; OTTHUMG00000019910.1; ENSG00000233137.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score 14.6 non-coding 
CPAT coding probability 3.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ZCCHC7-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZCCHC7-2:1
3.1 lnc-ZCCHC7-2:1
4.0 lnc-ZCCHC7-2:1
4.1 lnc-ZCCHC7-2:1
5.0 lnc-ZCCHC7-2:1
5.1 lnc-GRHPR-11:6
5.2 lnc-ZCCHC7-2:1