Transcript: lnc-ZDBF2-2:1

Basic information

LNCipedia transcript ID: lnc-ZDBF2-2:1 
LNCipedia gene ID: lnc-ZDBF2-2
RefSeq ID: NR_104359
Location (hg38): chr2:206203376-206266243
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3708 bp
Exons: 6
Sources: Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_104359; ENST00000623040.1; NR_104359.1
Alternative gene names: ENSG00000279220.1; GPR1-AS


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 60.9355 coding 
CPAT coding probability 0.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ZDBF2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZDBF2-2:1
4.0 lnc-ZDBF2-2:1
4.1 lnc-ZDBF2-2:1
5.0 lnc-ZDBF2-2:1
5.1 lnc-NOP58-52:1
5.2 lnc-ZDBF2-2:1