Transcript: lnc-ZDHHC17-19:1

Basic information

LNCipedia transcript ID: lnc-ZDHHC17-19:1 
LNCipedia gene ID: lnc-ZDHHC17-19
Location (hg38): chr12:77379808-77390599
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 344 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00020483
Alternative gene names: XLOC_009813; linc-NAV3-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -42.7461 non-coding 
CPAT coding probability 0.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZDHHC17-19:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NAV3-1:2
3.1 lnc-NAV3-1:3
4.0 lnc-NAV3-1:3
4.1 lnc-NAV3-1:3
5.0 lnc-NAV3-1:3
5.1 lnc-SYT1-54:1
5.2 lnc-ZDHHC17-19:1