Transcript: lnc-ZDHHC17-19:2

Basic information

LNCipedia transcript ID: lnc-ZDHHC17-19:2 
LNCipedia gene ID: lnc-ZDHHC17-19
Ensembl Gene ID: ENSG00000257835
Ensembl Transcript ID: ENST00000552736
Location (hg38): chr12:77379820-77390864
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 597 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000552736.1; RP1-97G4.1-001; OTTHUMT00000406728.1; NONHSAT029610
Alternative gene names: ENSG00000257835.1; RP1-97G4.1; OTTHUMG00000169975.1; AC073591.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -42.7461 non-coding 
CPAT coding probability 2.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZDHHC17-19:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NAV3-1:5
4.0 lnc-NAV3-1:5
4.1 lnc-NAV3-1:5
5.0 lnc-NAV3-1:5
5.1 lnc-SYT1-54:2
5.2 lnc-ZDHHC17-19:2