Transcript: lnc-ZDHHC17-20:1

Basic information

LNCipedia transcript ID: lnc-ZDHHC17-20:1 
LNCipedia gene ID: lnc-ZDHHC17-20
Ensembl Gene ID: ENSG00000258066
Ensembl Transcript ID: ENST00000549993
Location (hg38): chr12:77775783-77783576
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 376 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000549993.1; RP11-781A6.1-001; OTTHUMT00000406729.1
Alternative gene names: ENSG00000258066.1; RP11-781A6.1; OTTHUMG00000169976.1; AC138331.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -157.6736 non-coding 
CPAT coding probability 15.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZDHHC17-20:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NAV3-1:9
4.0 lnc-NAV3-1:9
4.1 lnc-NAV3-1:9
5.0 lnc-NAV3-1:9
5.1 lnc-SYT1-19:11
5.2 lnc-ZDHHC17-20:1