Transcript: lnc-ZDHHC17-20:3

Basic information

LNCipedia transcript ID: lnc-ZDHHC17-20:3 
LNCipedia gene ID: lnc-ZDHHC17-20
Location (hg38): chr12:77775816-77783933
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 700 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00020486; NONHSAT029616
Alternative gene names: XLOC_009813; linc-NAV3-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -157.6736 non-coding 
CPAT coding probability 18.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZDHHC17-20:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NAV3-1:6
3.1 lnc-NAV3-1:10
4.0 lnc-NAV3-1:10
4.1 lnc-NAV3-1:10
5.0 lnc-NAV3-1:10
5.1 lnc-SYT1-19:13
5.2 lnc-ZDHHC17-20:3