Transcript: lnc-ZDHHC6-1:1

Basic information

LNCipedia transcript ID: lnc-ZDHHC6-1:1 
LNCipedia gene ID: lnc-ZDHHC6-1
Ensembl Gene ID: ENSG00000232934
Ensembl Transcript ID: ENST00000424422
Location (hg38): chr10:112412295-112420007
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 551 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000424422.1; RP11-324O2.4-001; OTTHUMT00000050385.1; NONHSAT016401
Alternative gene names: ENSG00000233346.1; RP11-324O2.4; OTTHUMG00000019059.1; ENSG00000270599.1; RP11-324O2.6; ENSG00000232934.7; RP11-324O2.3; AL157786.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -31.7854 non-coding 
CPAT coding probability 18.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZDHHC6-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZDHHC6-1:1
4.0 lnc-ZDHHC6-1:1
4.1 lnc-ZDHHC6-1:1
5.0 lnc-ZDHHC6-1:1
5.1 lnc-BBIP1-21:2
5.2 lnc-ZDHHC6-1:1