Transcript: lnc-ZDHHC6-1:3

Basic information

LNCipedia transcript ID: lnc-ZDHHC6-1:3 
LNCipedia gene ID: lnc-ZDHHC6-1
Ensembl Gene ID: ENSG00000232934
Ensembl Transcript ID: ENST00000598447
Location (hg38): chr10:112406274-112409490
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 792 bp
Exons: 5
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT016400; ENST00000598447.1; ENST00000598447.5
Alternative gene names: ENSG00000232934.3; RP11-324O2.3; ENSG00000232934.7; AL157786.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 148.1086 coding 
CPAT coding probability 1.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ZDHHC6-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZDHHC6-1:3
4.0 lnc-ZDHHC6-1:3
4.1 lnc-ZDHHC6-1:3
5.0 lnc-ZDHHC6-1:3
5.1 lnc-BBIP1-21:7
5.2 lnc-ZDHHC6-1:3