Transcript: lnc-ZDHHC6-1:7

Basic information

LNCipedia transcript ID: lnc-ZDHHC6-1:7 
LNCipedia gene ID: lnc-ZDHHC6-1
Ensembl Gene ID: ENSG00000232934
Ensembl Transcript ID: ENST00000594870
Location (hg38): chr10:112406294-112409494
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 506 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000449782.1; RP11-324O2.3-001; OTTHUMT00000050383.1; NONHSAT139996; ENST00000594870.2
Alternative gene names: ENSG00000232934.1; RP11-324O2.3; OTTHUMG00000019057.1; ENSG00000232934.3; ENSG00000232934.7; AL157786.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -160.1519 non-coding 
CPAT coding probability 0.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZDHHC6-1:7 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZDHHC6-2:1
4.0 lnc-ZDHHC6-1:7
4.1 lnc-ZDHHC6-1:7
5.0 lnc-ZDHHC6-1:7
5.1 lnc-BBIP1-21:5
5.2 lnc-ZDHHC6-1:7