Transcript: lnc-ZFC3H1-7:1

Basic information

LNCipedia transcript ID: lnc-ZFC3H1-7:1 
LNCipedia gene ID: lnc-ZFC3H1-7
Ensembl Gene ID: ENSG00000258235
Ensembl Transcript ID: ENST00000547563
Location (hg38): chr12:72727923-72728844
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 381 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000547563.1; RP11-12K6.2-001; OTTHUMT00000405391.1; NONHSAT029476
Alternative gene names: ENSG00000258235.1; RP11-12K6.2; OTTHUMG00000169681.1; AC133480.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -153.4388 non-coding 
CPAT coding probability 0.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZFC3H1-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZFC3H1-7:1
4.0 lnc-ZFC3H1-7:1
4.1 lnc-ZFC3H1-7:1
5.0 lnc-ZFC3H1-7:1
5.1 lnc-LRRC10-33:1
5.2 lnc-ZFC3H1-7:1