Transcript: lnc-ZFC3H1-8:1

Basic information

LNCipedia transcript ID: lnc-ZFC3H1-8:1 
LNCipedia gene ID: lnc-ZFC3H1-8
Ensembl Gene ID: ENSG00000258294
Ensembl Transcript ID: ENST00000552840
Location (hg38): chr12:73116495-73143858
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 318 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000552840; ENST00000552840.1; RP11-314D7.1-001; OTTHUMT00000405360.1; NONHSAT029484
Alternative gene names: ENSG00000258294; RP11-314D7.1; ENSG00000258294.1; OTTHUMG00000169671.1; ENSG00000258294.5; AC090503.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -256.4483 non-coding 
CPAT coding probability 0.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZFC3H1-8:1 no no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZFC3H1-3:1
3.1 lnc-ZFC3H1-8:1
4.0 lnc-ZFC3H1-8:1
4.1 lnc-ZFC3H1-8:1
5.0 lnc-ZFC3H1-8:1
5.1 lnc-LRRC10-34:1
5.2 lnc-ZFC3H1-8:1