Transcript: lnc-ZFC3H1-8:2

Basic information

LNCipedia transcript ID: lnc-ZFC3H1-8:2 
LNCipedia gene ID: lnc-ZFC3H1-8
Ensembl Gene ID: ENSG00000258294
Ensembl Transcript ID: ENST00000551135
Location (hg38): chr12:73115957-73143856
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 981 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000551135; ENST00000551135.1; RP11-314D7.1-003; OTTHUMT00000405358.1; NONHSAT029482; ENST00000551135.5
Alternative gene names: ENSG00000258294; RP11-314D7.1; ENSG00000258294.1; OTTHUMG00000169671.1; ENSG00000258294.5; AC090503.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -214.1469 non-coding 
CPAT coding probability 0.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZFC3H1-8:2 no no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZFC3H1-3:2
3.1 lnc-ZFC3H1-8:2
4.0 lnc-ZFC3H1-8:2
4.1 lnc-ZFC3H1-8:2
5.0 lnc-ZFC3H1-8:2
5.1 lnc-LRRC10-34:2
5.2 lnc-ZFC3H1-8:2