Transcript: lnc-ZFP36L1-2:12

Basic information

LNCipedia transcript ID: lnc-ZFP36L1-2:12 
LNCipedia gene ID: lnc-ZFP36L1-2
Ensembl Gene ID: ENSG00000259038
Ensembl Transcript ID: ENST00000556301
Location (hg38): chr14:68627166-68628445
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 279 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000556301.1; CTD-2325P2.4-001; OTTHUMT00000414982.1
Alternative gene names: ENSG00000259038.1; CTD-2325P2.4; OTTHUMG00000171758.1; AL121820.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -91.5685 non-coding 
CPAT coding probability 0.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZFP36L1-2:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZFP36L1-3:1
4.0 lnc-ZFP36L1-3:1
4.1 lnc-ZFP36L1-2:12
5.0 lnc-ZFP36L1-2:12
5.1 lnc-ABCD4-84:13
5.2 lnc-ZFP36L1-2:12