Transcript: lnc-ZFP64-2:1

Basic information

LNCipedia transcript ID: lnc-ZFP64-2:1 
LNCipedia gene ID: lnc-ZFP64-2
Ensembl Gene ID: ENSG00000225785
Ensembl Transcript ID: ENST00000414598
Location (hg38): chr20:52451464-52455619
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 431 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028065; ENST00000414598; ENST00000414598.1; RP4-583K8.1-001; OTTHUMT00000079750.2; NONHSAT080365
Alternative gene names: XLOC_013796; linc-ZFP64-2; ENSG00000225785; RP4-583K8.1; ENSG00000225785.1; OTTHUMG00000032757.2; AL109610.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -168.061 non-coding 
CPAT coding probability 6.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZFP64-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZFP64-2:1
3.1 lnc-ZFP64-2:1
4.0 lnc-ZFP64-2:1
4.1 lnc-ZFP64-2:1
5.0 lnc-ZFP64-2:1
5.1 lnc-SPATA2-44:1
5.2 lnc-ZFP64-2:1