Transcript: lnc-ZFP69B-1:1

Basic information

LNCipedia transcript ID: lnc-ZFP69B-1:1 
LNCipedia gene ID: lnc-ZFP69B-1
Location (hg38): chr1:40464319-40466764
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2446 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000565390.1; RP1-228H13.5-001; OTTHUMT00000431151.1; NONHSAT002640
Alternative gene names: ENSG00000260920.1; RP1-228H13.5; OTTHUMG00000175830.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -87.872 non-coding 
CPAT coding probability 3.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZFP69B-1:1 no no no no

Available literature

  1. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNF643-1:1
4.0 lnc-ZNF643-1:1
4.1 lnc-ZNF643-1:1
5.0 lnc-ZNF643-1:1
5.1 lnc-TMCO2-8:1
5.2 lnc-ZFP69B-1:1