Transcript: lnc-ZFP69B-1:2

Basic information

LNCipedia transcript ID: lnc-ZFP69B-1:2 
LNCipedia gene ID: lnc-ZFP69B-1
Ensembl Gene ID: ENSG00000260920
Ensembl Transcript ID: ENST00000565390
Location (hg38): chr1:40464319-40466767
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2449 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000565390.2
Alternative gene names: ENSG00000260920.2; RP1-228H13.5; AL031985.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -87.872 non-coding 
CPAT coding probability 3.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZFP69B-1:2 no no no no

Available literature

  1. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-ZNF643-1:2
4.1 lnc-ZNF643-1:2
5.0 lnc-ZNF643-1:2
5.1 lnc-TMCO2-8:2
5.2 lnc-ZFP69B-1:2