Transcript: lnc-ZFYVE1-1:1

Basic information

LNCipedia transcript ID: lnc-ZFYVE1-1:1 
LNCipedia gene ID: lnc-ZFYVE1-1
Location (hg38): chr14:73058431-73059415
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 494 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000554737; ENST00000554737.1; RP11-109N23.4-001; OTTHUMT00000413347.1; NONHSAT037678
Alternative gene names: ENSG00000258813; RP11-109N23.4; ENSG00000258813.1; OTTHUMG00000171423.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -150.2157 non-coding 
CPAT coding probability 1.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZFYVE1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZFYVE1-1:1
3.1 lnc-ZFYVE1-1:1
4.0 lnc-ZFYVE1-1:1
4.1 lnc-ZFYVE1-1:1
5.0 lnc-ZFYVE1-1:1
5.1 lnc-ABCD4-28:1
5.2 lnc-ZFYVE1-1:1