Transcript: lnc-ZGRF1-3:1

Basic information

LNCipedia transcript ID: lnc-ZGRF1-3:1 
LNCipedia gene ID: lnc-ZGRF1-3
Location (hg38): chr4:112880460-112882330
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 712 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000511590.1; RP11-119H12.6-001; OTTHUMT00000365314.1
Alternative gene names: ENSG00000251126.1; RP11-119H12.6; OTTHUMG00000161563.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -34.8037 non-coding 
CPAT coding probability 1.69% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZGRF1-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C4orf21-3:1
4.0 lnc-C4orf21-3:1
4.1 lnc-C4orf21-3:1
5.0 lnc-C4orf21-3:1
5.1 lnc-NEUROG2-4:1
5.2 lnc-ZGRF1-3:1