Transcript: lnc-ZGRF1-5:1

Basic information

LNCipedia transcript ID: lnc-ZGRF1-5:1 
LNCipedia gene ID: lnc-ZGRF1-5
Ensembl Gene ID: ENSG00000248152
Ensembl Transcript ID: ENST00000508959
Location (hg38): chr4:112979590-113071962
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1176 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000508959.1; RP11-650J17.1-001; OTTHUMT00000365313.1; NONHSAT097889
Alternative gene names: ENSG00000248152.1; RP11-650J17.1; OTTHUMG00000161562.1; AC093879.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 54.4494 non-coding 
CPAT coding probability 44.00% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ZGRF1-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C4orf21-5:1
4.0 lnc-C4orf21-5:1
4.1 lnc-C4orf21-5:1
5.0 lnc-C4orf21-5:1
5.1 lnc-NEUROG2-10:1
5.2 lnc-ZGRF1-5:1