Transcript: lnc-ZIC4-2:1

Basic information

LNCipedia transcript ID: lnc-ZIC4-2:1 
LNCipedia gene ID: lnc-ZIC4-2
Ensembl Gene ID: ENSG00000239661
Ensembl Transcript ID: ENST00000470739
Location (hg38): chr3:147844123-147846657
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 493 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005841; ENST00000470739; ENST00000470739.1; RP11-78O22.1-001; OTTHUMT00000355528.1; NONHSAT092589
Alternative gene names: XLOC_003274; linc-ZIC4-2; ENSG00000239661; RP11-78O22.1; ENSG00000239661.1; OTTHUMG00000159462.1; AC092925.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -264.2264 non-coding 
CPAT coding probability 0.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZIC4-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZIC4-2:1
3.1 lnc-ZIC4-2:1
4.0 lnc-ZIC4-2:1
4.1 lnc-ZIC4-2:1
5.0 lnc-ZIC4-2:1
5.1 lnc-HLTF-11:1
5.2 lnc-ZIC4-2:1