Transcript: lnc-ZKSCAN8-2:1

Basic information

LNCipedia transcript ID: lnc-ZKSCAN8-2:1 
LNCipedia gene ID: lnc-ZKSCAN8-2
Location (hg38): chr6:28161781-28169594
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1628 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011
Alternative transcript names: ENST00000440790
Alternative gene names: ENSG00000226314; AL022393.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score 524.322 coding 
CPAT coding probability 99.63% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ZKSCAN8-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF192-1:1
3.1 lnc-ZNF192-2:1
4.0 lnc-ZNF192-2:1
4.1 lnc-ZNF192-2:1
5.0 lnc-ZNF192-2:1
5.1 lnc-OR2I1P-55:1
5.2 lnc-ZKSCAN8-2:1