Transcript: lnc-ZMAT5-1:1

Basic information

LNCipedia transcript ID: lnc-ZMAT5-1:1 
LNCipedia gene ID: lnc-ZMAT5-1
Ensembl Gene ID: ENSG00000232396
Ensembl Transcript ID: ENST00000416352
Location (hg38): chr22:29705256-29719859
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 590 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00029466; ENST00000416352.1; RP1-76B20.11-001; OTTHUMT00000322077.1; NONHSAT084726
Alternative gene names: XLOC_014338; linc-NIPSNAP1; ENSG00000232396.2; RP1-76B20.11; OTTHUMG00000151279.2; AC004882.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -704.5323 non-coding 
CPAT coding probability 13.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZMAT5-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZMAT5-1:1
3.1 lnc-ZMAT5-1:1
4.0 lnc-ZMAT5-1:1
4.1 lnc-ZMAT5-1:1
5.0 lnc-ZMAT5-1:1
5.1 lnc-PLA2G3-33:1
5.2 lnc-ZMAT5-1:1