Transcript: lnc-ZMAT5-1:3

Basic information

LNCipedia transcript ID: lnc-ZMAT5-1:3 
LNCipedia gene ID: lnc-ZMAT5-1
Ensembl Gene ID: ENSG00000239446
Ensembl Transcript ID: ENST00000420180
Location (hg38): chr22:29711820-29719714
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 244 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00029468; ENST00000420180.1; RP1-76B20.12-001; OTTHUMT00000322079.1; NONHSAT084728
Alternative gene names: XLOC_014338; linc-NIPSNAP1; ENSG00000239446.1; RP1-76B20.12; OTTHUMG00000151281.1; AC004882.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -124.5523 non-coding 
CPAT coding probability 0.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZMAT5-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZMAT5-1:3
3.1 lnc-ZMAT5-1:3
4.0 lnc-ZMAT5-1:3
4.1 lnc-ZMAT5-1:3
5.0 lnc-ZMAT5-1:3
5.1 lnc-PLA2G3-33:4
5.2 lnc-ZMAT5-1:3