Transcript: lnc-ZMYM2-5:2

Basic information

LNCipedia transcript ID: lnc-ZMYM2-5:2 
LNCipedia gene ID: lnc-ZMYM2-5
Ensembl Gene ID: ENSG00000223576
Ensembl Transcript ID: ENST00000422148
Location (hg38): chr13:19841827-19843672
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 444 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT032291; ENST00000422148.2
Alternative gene names: ENSG00000223576.2; RP11-61K9.2; AL355001.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -47.9029 non-coding 
CPAT coding probability 4.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZMYM2-5:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZMYM2-5:2
4.0 lnc-ZMYM2-5:2
4.1 lnc-ZMYM2-5:2
5.0 lnc-ZMYM2-5:2
5.1 lnc-GTF3A-146:1
5.2 lnc-ZMYM2-5:2