Transcript: lnc-ZNF131-1:2

Basic information

LNCipedia transcript ID: lnc-ZNF131-1:2 
LNCipedia gene ID: lnc-ZNF131-1
Ensembl Gene ID: ENSG00000215068
Ensembl Transcript ID: ENST00000505541
Location (hg38): chr5:43041757-43044886
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 402 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000505541; ENST00000505541.1; AC025171.1-005; OTTHUMT00000367997.1; NONHSAT101268
Alternative gene names: ENSG00000215068; AC025171.1; ENSG00000215068.3; OTTHUMG00000131146.2; ENSG00000215068.7; AC025171.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.6016 non-coding 
CPAT coding probability 2.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF131-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF131-1:2
3.1 lnc-ZNF131-1:2
4.0 lnc-ZNF131-1:2
4.1 lnc-ZNF131-1:2
5.0 lnc-ZNF131-1:2
5.1 lnc-CARD6-41:11
5.2 lnc-ZNF131-1:2